rs6255219 SNP Detail

Summary

• ID
  rs6255219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156604932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAA GCCATTGTCA CCTAGGCTAC
  Y
  TTTCCTGCCT TGATTACATT TCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8661000	WI_WGS_1_157892973	WI	MOUSE	f	SNP				T		C
ss44948717	mCV23085570	ABI	CRAMUS_MOUSE	f	SNP			T			C		T
ss49720892	NES13071170	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C		C		T	C	C	C	T	C
ss145804826	ENSMUSSNP829640	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6255219					SNP	C	C	T	T	C	C	C	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49720892	NES13071170	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156604932 () rs orientation: forward

Symbol	Name	Function Class
Gm71086	predicted gene, 71086	within coordinates
Rr421253	regulatory region 421253	978 bp distal
Rr421254	regulatory region 421254	557 bp proximal
Rr421255	regulatory region 421255	1553 bp proximal