rs6255894 SNP Detail

Summary

• ID
  rs6255894
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:81201132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTCCCA CCTGCAGTCT
  ATATCTTGTA GCCGAGAATG GCCCTGTTTG AGGCAGTTGT CAGTGTTGAC CTGGCAGCAA
  TCCTGCCTCA GCCTTGAGCC ACTTATGGCT GTTGGGGGAA GGAGGGACCA AGGGTGTGCC
  TAGCCTGTAA CTCCCCACAG ATGGTGCATG CATGGGAGGC CATGCAGGCT GCAGGAGTGG
  S
  GCTTGCAAGG GACCCACGTG AGGTGGCCTG TCATCAGCAC CATGGAAGGC CCAAGTGTGA
  GCAGACCTAT GAAATGGGAC TTTTCTGCTA GGTGTGGGTG GCGACACTAA GTGTGCCAAG
  GCAGGAGGAT CTCTGTGGGC TTATGAACAG CTCGGGATAC ACACAAGAAT CTAAAAAGGG
  AGGGCATTCA GGCACATGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8661676	WI_WGS_10_81840104	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6255894					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81201132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	within coordinates
Fzr1	fizzy and cell division cycle 20 related 1	1581 bp downstream
Mfsd12	major facilitator superfamily domain containing 12	mRNA-UTR
Rr435631	regulatory region 435631	508 bp proximal
Tektip1	tektin bundle interacting protein 1	Intron
Tssr94743	transcription start site region 94743	1260 bp downstream
Tssr94744	transcription start site region 94744	997 bp downstream
Tssr94745	transcription start site region 94745	926 bp downstream
Tssr94746	transcription start site region 94746	884 bp downstream
Tssr94747	transcription start site region 94747	872 bp downstream
Tssr98595	transcription start site region 98595	439 bp upstream
Tssr98596	transcription start site region 98596	486 bp downstream
Tssr98597	transcription start site region 98597	509 bp downstream
Tssr98598	transcription start site region 98598	536 bp downstream