rs6256010 SNP Detail

Summary

• ID
  rs6256010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:6705450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGCCAGTTGA
  TAGTTGAAGT TATCCATAAT ACTAGGAGAC TAAGTGAGGT CCTGGTGAAC TATGGCTGGA
  TATCTCTAGG GAGCTATCAT CTCAGCTGAA AGCTTGGGCA CTCTGTGCTA ATCTCTAATT
  CCTGATTGAT GGACTGGCAC CTACAGCTGA CCTAAACTTG AGAAGTCCTA ACAGGGTGTG
  TTTAGTTGGA CACTTTAACT CCCATTATTT TTTACCACTA GTTCCAAGGT TAATgggagg
  R
  aggaaggaag gaaggaagga gggaaagaag gaaggtaggt aggtaggtta gaaaagaagg
  aaagaaTGGT AGGGAAGACA GGAAATAAGN GTGTAAAGGA GGAGGTTACA GACATAATAT
  ATTAGGCACA CAAATTTTGT ATCAATAATT AGCTTTGAAT TTTATCAAAT GTAATTTACC
  CCTGATTTAG TAACACCAAT ATTAATACAT ATCTTAATAT TAAAATCACT ACAAAAGATA
  GTATTGTTTG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8661792	WI_WGS_1_6645002	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6256010					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:6705450 () rs orientation: forward

Symbol	Name	Function Class
St18	suppression of tumorigenicity 18	within coordinates
Tssr5859	transcription start site region 5859	810 bp downstream
Tssr5860	transcription start site region 5860	744 bp upstream
Tssr5861	transcription start site region 5861	771 bp upstream