rs6256163 SNP Detail

Summary

• ID
  rs6256163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:6705540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATGGGAGG AAGGAAGGAA GGAAGGAAGG AGGGAAAGAA
  GGAAGGTAGG TAGGTAGGTT AGAAAAGAAG GAAAGAATGG TAGGGAAGAC AGGAAATAAG
  R
  GTGTAAAGGA GGAGGTTACA GACATAATAT ATTAGGCACA CAAATTTTGT ATCAATAATT
  AGCTTTGAAT TTTATCAAAT GTAATTTACC CCTGATTTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8661945	WI_WGS_1_6645092	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6256163					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:6705540 () rs orientation: forward

Symbol	Name	Function Class
St18	suppression of tumorigenicity 18	Intron
Tssr5859	transcription start site region 5859	900 bp downstream
Tssr5860	transcription start site region 5860	654 bp upstream
Tssr5861	transcription start site region 5861	681 bp upstream