rs6257202 SNP Detail

Summary

• ID
  rs6257202
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8439246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TCATGCATCA
  GTGCAATAGA GTCTAGTAAG TGTCTCTAGC CAGGCTTGTC AGTTGTGCAG GAAACAAGGC
  CTGGTCCTAG CAAACCTTAG CATATCTTCC CTTTTTATTA TAAATGGGTG GTTGTTTGGT
  TTGTTTATTT TTATAATTTT TACTGATGCT CAGTAACCAT GAAAAACTGT GCACATTCAT
  GTACTAATAG ATCTGTACCT ATCTATCTCT GTACGCATAT ATACAGTTCA CTGTAGAAAA
  Y
  CACAGCTAGC GAGCATCNCA GACTCATGCA AACCAAGTGA TCTTGTTTAC AGTAACCGTC
  AACAGTGCCA ATAAGGGGTG AGGACACTAA CAGTGTAACT GGTGACCACG TGAACAGTTC
  CATGAATTAA ATGTTTCCTG TNTTAATCAG TATTCTTAAA TTAAAAGAAA ATGTTTATAA
  TGGAAATGTC AGAGTGAATG TGGGCTTTTT CTGGAGGTTG CATTAATTCT CAGAAATGTC
  AATTCACCCG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8662985	WI_WGS_16_8099422	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6257202					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8439246 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	within coordinates
Gm7541	predicted gene 7541	1804 bp downstream
Gm9851	predicted gene 9851	164 bp upstream
Gm55031	predicted gene, 55031	1781 bp downstream
Tssr136994	transcription start site region 136994	1961 bp downstream
Tssr136995	transcription start site region 136995	1883 bp downstream
Tssr136996	transcription start site region 136996	1867 bp downstream
Tssr136997	transcription start site region 136997	1759 bp downstream
Tssr136998	transcription start site region 136998	1571 bp downstream