rs6257241 SNP Detail

Summary

• ID
  rs6257241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8439264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GAGTCTAGTA
  AGTGTCTCTA GCCAGGCTTG TCAGTTGTGC AGGAAACAAG GCCTGGTCCT AGCAAACCTT
  AGCATATCTT CCCTTTTTAT TATAAATGGG TGGTTGTTTG GTTTGTTTAT TTTTATAATT
  TTTACTGATG CTCAGTAACC ATGAAAAACT GTGCACATTC ATGTACTAAT AGATCTGTAC
  CTATCTATCT CTGTACGCAT ATATACAGTT CACTGTAGAA AANCACAGCT AGCGAGCATC
  R
  CAGACTCATG CAAACCAAGT GATCTTGTTT ACAGTAACCG TCAACAGTGC CAATAAGGGG
  TGAGGACACT AACAGTGTAA CTGGTGACCA CGTGAACAGT TCCATGAATT AAATGTTTCC
  TGTNTTAATC AGTATTCTTA AATTAAAAGA AAATGTTTAT AATGGAAATG TCAGAGTGAA
  TGTGGGCTTT TTCTGGAGGT TGCATTAATT CTCAGAAATG TCAATTCACC CGAGATGGTA
  CAATGGCACA                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8663024	WI_WGS_16_8099440	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6257241					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8439264 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	within coordinates
Gm7541	predicted gene 7541	1786 bp downstream
Gm9851	predicted gene 9851	182 bp upstream
Gm55031	predicted gene, 55031	1763 bp downstream
Rr511288	regulatory region 511288	1138 bp distal
Rr511289	regulatory region 511289	651 bp distal
Tssr136994	transcription start site region 136994	1979 bp downstream
Tssr136995	transcription start site region 136995	1901 bp downstream
Tssr136996	transcription start site region 136996	1885 bp downstream
Tssr136997	transcription start site region 136997	1777 bp downstream
Tssr136998	transcription start site region 136998	1589 bp downstream