rs6257561 SNP Detail

Summary

• ID
  rs6257561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:43350939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCTCCCT CTCAGCTTGC
  CCTGTTCAGT GTGTCTGACA AAACTGGCCT TGTGGAATTT GCCAGAAACC TTGAATCTCT
  TGGCTTGAGT CTGGTTACTT CTGGGGGCAC AGCAAAAGCT ATCAGGGATG CTGGCCTGTC
  AGTCAGAGAT GTGTCTGAGC TAACGGGGTT CCTGAAAATG TTAGGGGTGT GTGTGAAAAC
  Y
  TTGCATCTTG CCATCCGTGC TGGAATCTTG GCATTCAATA TTCCTGAAGA TACTGCTGAC
  ATGGCCAGGC TTGATAACCT TCTAAGAGTT GTTGTCTGTA ACCTGTATCC CTTTGTGAAG
  ACTGTAGCTT CTCCAGATGT AACTGTTGAG ACAGCTATTG AGCAAACTGA TATTGGTGGC
  ATGACCTTAC TGAGAGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8663344	WI_WGS_6_43594293	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6257561					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:43350939 () rs orientation: forward

Symbol	Name	Function Class
Gm15550	predicted gene 15550	within coordinates
Tpk1	thiamine pyrophosphokinase	within coordinates