rs6257562 SNP Detail

Summary

• ID
  rs6257562
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118782596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG GGGGCATAGG GGCTGTTCTT
  M
  CAGGTCCCAG TTGGTCTCCC TCATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8663345	WI_WGS_7_108831147	WI	MOUSE	f	SNP			A	C
ss46090781	mCV23657735	ABI	CRAMUS_MOUSE	f	SNP	A	A	A		C
ss145804426	ENSMUSSNP756516	ENSEMBL	ENSEMBL_Sanger	f	SNP					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6257562					SNP	A	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118782596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19631	CpG island 19631	793 bp proximal
Cpgi19632	CpG island 19632	1907 bp proximal
Gm73654	predicted gene, 73654	1539 bp upstream
Gpr139	G protein-coupled receptor 139	within coordinates
Rr381384	regulatory region 381384	1723 bp upstream
Rr654599	regulatory region 654599	1554 bp distal
Rr654600	regulatory region 654600	1220 bp proximal
Rr654601	regulatory region 654601	1550 bp proximal
Tssr74477	transcription start site region 74477	1154 bp downstream
Tssr74478	transcription start site region 74478	1175 bp downstream
Tssr74479	transcription start site region 74479	1225 bp downstream