rs6257600 SNP Detail

Summary

• ID
  rs6257600
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:43389713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCCTACA TGATTTTAAT
  TGCCAAAGTA TTTATTCTTT ATCTTATTTG ATTTGAGTCT GCCCAATTTG GGGGAAAATT
  CATCTTGAAA AAGGACTTTG AGATAGGCTC TTTCATAATG TTCAAAATTT AAGGAAATAG
  ACAAGCTAAT GAACAGTGAT TAATTGATCA TATGTACACA AGGGACTAAG ATAGAAAATA
  W
  GGACTTGAAC AATCCATCCA AATTTTCTGT TTTAAATTCT CATCTATAAA ATATGGATAA
  TGATATTACC TCCATATTAA TATCAAGCTT GACTTAGAGA CTGAGTTTAA AGAAAGGACT
  GACCAGGATA TGTGATAGAG CTATTCAGAA TACAAAGTAT TATTACTTAG GGCTAGAAGA
  AAATTATACC CACAGCAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8663383	WI_WGS_6_43633067	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6257600					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:43389713 () rs orientation: forward

Symbol	Name	Function Class
Gm38800	predicted gene, 38800	within coordinates
Tpk1	thiamine pyrophosphokinase	within coordinates