rs6257786 SNP Detail

Summary

• ID
  rs6257786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:8439388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ATAATTTTTA
  CTGATGCTCA GTAACCATGA AAAACTGTGC ACATTCATGT ACTAATAGAT CTGTACCTAT
  CTATCTCTGT ACGCATATAT ACAGTTCACT GTAGAAAANC ACAGCTAGCG AGCATCNCAG
  ACTCATGCAA ACCAAGTGAT CTTGTTTACA GTAACCGTCA ACAGTGCCAA TAAGGGGTGA
  GGACACTAAC AGTGTAACTG GTGACCACGT GAACAGTTCC ATGAATTAAA TGTTTCCTGT
  R
  TTAATCAGTA TTCTTAAATT AAAAGAAAAT GTTTATAATG GAAATGTCAG AGTGAATGTG
  GGCTTTTTCT GGAGGTTGCA TTAATTCTCA GAAATGTCAA TTCACCCGAG ATGGTACAAT
  GGCACAGTAA GGATGGATTC CACCCAAGGC CAGCCTGGTG AGCCAGTGAA CTTAGAGGTA
  CTGTGANGAG CATGGGGGAC TCACACAGNT GCATTCCTTG ATAGCCCACT TGAGCATGGG
  CAACAATCTG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8663569	WI_WGS_16_8099564	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6257786					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8439388 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	mRNA-UTR
Gm7541	predicted gene 7541	1662 bp downstream
Gm9851	predicted gene 9851	306 bp upstream
Gm55031	predicted gene, 55031	1639 bp downstream
Rr511288	regulatory region 511288	1262 bp distal
Rr511289	regulatory region 511289	775 bp distal
Tssr136997	transcription start site region 136997	1901 bp downstream
Tssr136998	transcription start site region 136998	1713 bp downstream