rs6258074 SNP Detail

Summary

• ID
  rs6258074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118782684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCT TCAGGAATTC ACTACAAGTC
  Y
  CAGCTTCACT TTCCAAAGGA CATTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8663857	WI_WGS_7_108831235	WI	MOUSE	f	SNP							C		T
ss46137268	mCV23657737	ABI	CRAMUS_MOUSE	f	SNP	C	C	C				C			T
ss47176919	NES11577513	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T		T		T	C	C	T	C	C	T	C
ss145804433	ENSMUSSNP3548507	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6258074					SNP	C	C	C	C	C	T	C	T	T	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47176919	NES11577513	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118782684 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19631	CpG island 19631	705 bp proximal
Cpgi19632	CpG island 19632	1819 bp proximal
Gm73654	predicted gene, 73654	1451 bp upstream
Gpr139	G protein-coupled receptor 139	within coordinates
Rr381384	regulatory region 381384	1635 bp upstream
Rr654599	regulatory region 654599	1642 bp distal
Rr654600	regulatory region 654600	1132 bp proximal
Rr654601	regulatory region 654601	1462 bp proximal
Tssr74477	transcription start site region 74477	1066 bp downstream
Tssr74478	transcription start site region 74478	1087 bp downstream
Tssr74479	transcription start site region 74479	1137 bp downstream