rs6258131 SNP Detail

Summary

• ID
  rs6258131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:43389815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGGCTCTT TCATAATGTT
  CAAAATTTAA GGAAATAGAC AAGCTAATGA ACAGTGATTA ATTGATCATA TGTACACAAG
  GGACTAAGAT AGAAAATATG GACTTGAACA ATCCATCCAA ATTTTCTGTT TTAAATTCTC
  ATCTATAAAA TATGGATAAT GATATTACCT CCATATTAAT ATCAAGCTTG ACTTAGAGAC
  Y
  GAGTTTAAAG AAAGGACTGA CCAGGATATG TGATAGAGCT ATTCAGAATA CAAAGTATTA
  TTACTTAGGG CTAGAAGAAA ATTATACCCA CAGCAAAGTT TATTCACAGC ACTTCTTGAT
  TCTTTCTCTA CAATTCACAT AATCATGAAA GTTATTGCTT TGTTGTCTGG ATATATTAAC
  TGGACGGCTG AGTGCACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8663915	WI_WGS_6_43633169	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6258131					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:43389815 () rs orientation: forward

Symbol	Name	Function Class
Gm38800	predicted gene, 38800	within coordinates
Tpk1	thiamine pyrophosphokinase	within coordinates