rs6258170 SNP Detail

Summary

• ID
  rs6258170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127682311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGTAATA ATTTTCTAAA
  CATGAGATGT TCAGTATGAT ATAAGTGGAT ATAAGTGGAT AGGACAAGCC CACTTTTAGG
  ATATGGCCTA GTTTTTAGAA CAACCAAAGT TTTAACAACA GTAATCAAAT ATAGAGTGCC
  TAAAGACTTT GATTGAGAAA CATCCAGAAA TATCACAATT GTTATGCCAT ATTCATTACC
  R
  TGTAAAATGC ACTGTAATAA AACTAATCAA TACAATAAAT AAAGGGGAGA GAACTAAATA
  TGAAGTGTAT TCATTTTATA ATATACCTTA TACGCTCTGC CTAAGGTTAA TGAATGCAGT
  TTCCTGTGTA CTTGAGTTGT GACTGTAAAC TCTCTTGGAG GACTTGAGGT ACTCAGTGGA
  CAGATACTCA GCCTGTTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8663954	WI_WGS_3_128372464	WI	MOUSE	f	SNP			A	G
ss135874265	ENSMUSSNP5612917	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320957918	CHEV_3_127591580	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6258170					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127682311 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	745 bp proximal
Rr584893	regulatory region 584893	1468 bp proximal