rs6258217 SNP Detail

Summary

• ID
  rs6258217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50215244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAATCTGC TAAAACATAC
  ATCACGTTTC ATTCTAATTA CTGATGGATC CTTTTTATTT CAGGGTTGTA GTAGCTTGTA
  TTAGCTTGTA GGTACAGAAT AATTTCTTAG CAGAGCAGTG CCATATTGCC CATCTGCCTG
  ATTTGGATGG AAAAACCAAA GTATTTTATA TTTTTCTTTA TGTTATCTAA GAAAAGAGAC
  Y
  GACAGTATGA AATGGTTTGC AGGGGTTCAT ACAATAGACA TATGCATATT TTGTCTGCAT
  ACTAATTACC ACCCAATATG TCAGCCAGCA AAAACATGGC TCAGTAGGAG AGAGATATAG
  TTGAGAAGTA CTTTAGAGAT TGCAGTGTTT AATTCCAGAA GGCAGGAAGC AGTAGTCAAG
  TGTATTTGTT ACACTTAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8664001	WI_WGS_3_50497989	WI	MOUSE	f	SNP							T		C
ss49594602	NES12921271	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6258217					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49594602	NES12921271	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50215244 () rs orientation: forward

Symbol	Name	Function Class
Rr67417	regulatory region 67417	1957 bp proximal
Rr75684	regulatory region 75684	1750 bp proximal