rs6258628 SNP Detail

Summary

• ID
  rs6258628
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127682380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTTTAG GATATGGCCT
  AGTTTTTAGA ACAACCAAAG TTTTAACAAC AGTAATCAAA TATAGAGTGC CTAAAGACTT
  TGATTGAGAA ACATCCAGAA ATATCACAAT TGTTATGCCA TATTCATTAC CATGTAAAAT
  GCACTGTAAT AAAACTAATC AATACAATAA ATAAAGGGGA GAGAACTAAA TATGAAGTGT
  R
  TTCATTTTAT AATATACCTT ATACGCTCTG CCTAAGGTTA ATGAATGCAG TTTCCTGTGT
  ACTTGAGTTG TGACTGTAAA CTCTCTTGGA GGACTTGAGG TACTCAGTGG ACAGATACTC
  AGCCTGTTAG GCACGTTTCC TGCGTTCTTC CTGTGGTGCA CTAGTGTATC CTACAGTCTG
  GACAGTAACA GCATCTACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8664415	WI_WGS_3_128372533	WI	MOUSE	f	SNP			A	G
ss135874271	ENSMUSSNP2895212	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			A
ss320957920	CHEV_3_127591649	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6258628					SNP	G	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127682380 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	676 bp proximal
Rr584893	regulatory region 584893	1399 bp proximal