rs6258670 SNP Detail

Summary

• ID
  rs6258670
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127682418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GATAGGACAA
  GCCCACTTTT AGGATATGGC CTAGTTTTTA GAACAACCAA AGTTTTAACA ACAGTAATCA
  AATATAGAGT GCCTAAAGAC TTTGATTGAG AAACATCCAG AAATATCACA ATTGTTATGC
  CATATTCATT ACCNTGTAAA ATGCACTGTA ATAAAACTAA TCAATACAAT AAATAAAGGG
  GAGAGAACTA AATATNAAGT GTNTTCATTT TATAATATAC CTTATACGCT CTGCCTAAGG
  K
  TAATGAATGC AGTTTCCTGT GTACTTGAGT TGTGACTGTA AACTNTCTTG GAGGACTTGA
  GGTACTCAGT GGACAGATAC TCAGCCTGTT AGGCACGTTT CCTGCGTTCT TCCTGTGNTG
  CACTAGTGTA TCCTACAGTC TGGACAGTAA CAGCATCTAC TCACAGGGAG CCAGATCAGG
  TTTCTCACCA AAAGACTTTG TATGAATTGG TGATGGAAGA AACTAGCCAA AGTCACACAG
  TTTTCCTACA                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8664457	WI_WGS_3_128372571	WI	MOUSE	f	SNP			T	G
ss135874274	ENSMUSSNP178541	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6258670					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127682418 () rs orientation: forward

Symbol	Name	Function Class
Fam241a	family with sequence similarity 241, member A	Intron
Rr584892	regulatory region 584892	638 bp proximal
Rr584893	regulatory region 584893	1361 bp proximal