rs6258690 SNP Detail

Summary

• ID
  rs6258690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35734619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCTGCAG AAACACCTGT
  GGGGATGATC GTTTGATTGT TTGGGGTTTT TCCCTTCTTT TTTTAAACCT GAGGAAAACT
  GTTGAGTCAG CTATTTTTAT CATCCAAGAT TTATTCCAGA GATTTCCTCC GGCTTGTGAG
  AGACATCTTA TGTCCCTGTC ACAGCCAATT GTCATAAGGG AATGAAAGCT CCCCAAAGTG
  Y
  CCACAAGCAG GTTAGGGTAC AGGGGGGTTC TATGTGGTGA ATTGCAAAAA TATTGATTTT
  TTTTTTTTGT TTCTTCACAG TTTGAATCTG ACTGTATGGC CTTATGGGAA TTTTCTCTCA
  TGGCCGTGAA GCTCCAGGAG GGGAGGGCCA GGATGCCTGC CTTACTCTTC ATTTCTCTCT
  GAATGGCTCT TTTTATAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8664477	WI_WGS_2_36276203	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6258690					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35734619 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm10829	predicted gene 10829			within coordinates
Rr555798	regulatory region 555798			1435 bp distal
Rr555799	regulatory region 555799			143 bp distal
Rr555800	regulatory region 555800			1155 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant