rs6258744 SNP Detail

Summary

• ID
  rs6258744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72079541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTAGGA GATCTACTCA
  GAATGGAGTG AGACGGACTC TCAGCTGGCT TTTAATCTTT GCCTCTCCAG TGGCTAAAAA
  TGTTGGAGAG TTTTTCATAC ATTTGCTGAT CAATTGTAGT TCATCTTTTG AGAACTGTCT
  ATTCAGCTTG TTAGGTCATT TGTTGATAGA ATAATTGTGT GTGTGTGTTT ACAGAATCTA
  R
  GTTATTTCTC CCCTCTCAGA TATATTGTTG GCAAAGATTT TTCTCCCATT CCATATGCCG
  ACTATTCAAT CTGTTTTTAC TTTGCGGTGC AGAAATCTTT TAAATTCCCA GGTCAATTTT
  TGGAATTATT ATTAATAATC TTATGGGTAT GGGTGTTTTC CCTGAATGTA TGTCTGTTCA
  CCATTTTTGT GTCTGGTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8664532	WI_WGS_9_72811376	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6258744					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72079541 () rs orientation: forward

Symbol	Name	Function Class
Rr197170	regulatory region 197170	1141 bp distal
Rr197171	regulatory region 197171	741 bp distal
Rr383574	regulatory region 383574	1804 bp downstream