rs6258773 SNP Detail

Summary

• ID
  rs6258773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8439575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGTTTCC TGTGTTAATC
  AGTATTCTTA AATTAAAAGA AAATGTTTAT AATGGAAATG TCAGAGTGAA TGTGGGCTTT
  TTCTGGAGGT TGCATTAATT CTCAGAAATG TCAATTCACC CGAGATGGTA CAATGGCACA
  GTAAGGATGG ATTCCACCCA AGGCCAGCCT GGTGAGCCAG TGAACTTAGA GGTACTGTGA
  R
  GAGCATGGGG GACTCACACA GATGCATTCC TTGATAGCCC ACTTGAGCAT GGGCAACAAT
  CTGAAAGCTG TTCATCGAAG CTCCACCAAT GTGGCCCCTC CTTGAGCAAG GGTTTATGTA
  GCCTCATGGC TGCTGTGAGT CCTGTGGGCT TCTATCTTCC TTACCTTTCT CCTATGACCC
  CGTATCTGAC AAGATGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8664561	WI_WGS_16_8099751	WI	MOUSE	f	SNP								A	G
ss51776937	NES14544633	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	A			A	A	G	A	A	G	A
ss147829774	ENSMUSSNP4755750	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6258773					SNP	A	A	G	G	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776937	NES14544633	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8439575 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	143 bp downstream
Gm7541	predicted gene 7541	1475 bp downstream
Gm9851	predicted gene 9851	493 bp upstream
Gm55031	predicted gene, 55031	1452 bp downstream
Rr511288	regulatory region 511288	1449 bp distal
Rr511289	regulatory region 511289	962 bp distal
Tssr136998	transcription start site region 136998	1900 bp downstream