rs6258807 SNP Detail

Summary

• ID
  rs6258807
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8439597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTTAAA TTAAAAGAAA
  ATGTTTATAA TGGAAATGTC AGAGTGAATG TGGGCTTTTT CTGGAGGTTG CATTAATTCT
  CAGAAATGTC AATTCACCCG AGATGGTACA ATGGCACAGT AAGGATGGAT TCCACCCAAG
  GCCAGCCTGG TGAGCCAGTG AACTTAGAGG TACTGTGAAG AGCATGGGGG ACTCACACAG
  M
  TGCATTCCTT GATAGCCCAC TTGAGCATGG GCAACAATCT GAAAGCTGTT CATCGAAGCT
  CCACCAATGT GGCCCCTCCT TGAGCAAGGG TTTATGTAGC CTCATGGCTG CTGTGAGTCC
  TGTGGGCTTC TATCTTCCTT ACCTTTCTCC TATGACCCCG TATCTGACAA GATGGAAGTT
  AAGGAGAAAG GCTCTGTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8664595	WI_WGS_16_8099773	WI	MOUSE	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6258807					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8439597 () rs orientation: forward

Symbol	Name	Function Class
Abat	4-aminobutyrate aminotransferase	165 bp downstream
Gm7541	predicted gene 7541	1453 bp downstream
Gm9851	predicted gene 9851	515 bp upstream
Gm55031	predicted gene, 55031	1430 bp downstream
Rr511288	regulatory region 511288	1471 bp distal
Rr511289	regulatory region 511289	984 bp distal
Tssr136998	transcription start site region 136998	1922 bp downstream