rs6259079 SNP Detail

Summary

• ID
  rs6259079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70410770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTTGTCTCA GTATCTGGCA GGATGGAGAG AACTACTTAG
  GTGAGTGGTC TCCCTTCCCC AAGCCCATCT TCCTCCAAAT GATTCTGTGG TTTCGCAAGT
  Y
  ATCTCCCCAC TTCCACCACC AAACAGGTTC CTAACTCCCC TTGGCACTGT CTTCGCCTTT
  GCCACCAGCG AGGCCTTCAA CAAGGTGACC GACCTCGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8664867	WI_WGS_11_71107263	WI	MOUSE	f	SNP							C		T
ss37165505	NES08484072	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		T	C	C		T	C	C	T		C
ss323735934	CHEV_11_70333446	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6259079					SNP	C	C	C	C	C	C	C	T	T	T	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165505	NES08484072	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70410770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3187	CpG island 3187	within coordinates
Gltpd2	glycolipid transfer protein domain containing 2	within coordinates
Gm12317	predicted gene 12317	1901 bp upstream
Rr450318	regulatory region 450318	738 bp distal
Rr450319	regulatory region 450319	275 bp proximal
Tssr102724	transcription start site region 102724	783 bp downstream
Tssr102725	transcription start site region 102725	769 bp downstream
Tssr102726	transcription start site region 102726	741 bp downstream
Tssr102727	transcription start site region 102727	304 bp downstream