rs6259572 SNP Detail

Summary

• ID
  rs6259572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70410854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CTCATGGGGC
  GCTGGGTCGC ATGGTGAGCC CCTTCCTGGC CTGTATGAGC CCTGAAGGGG ATGTGGCGTT
  GTCTCAGTAT CTGGCAGGAT GGAGAGAACT ACTTAGGTGA GTGGTCTCCC TTCCCCAAGC
  CCATCTTCCT CCAAATGATT CTGTGGTTTC GCAAGTNATC TCCCCACTTC CACCACCAAA
  CAGGTTCCTA ACTCCCCTTG GCACTGTCTT CGCCTTTGCC ACCAGCGAGG CCTTCAACAA
  R
  GTGACCGACC TCGAGGCTCG TGTGCACGGC CCCAATGCTT CACACTACAC ATCGCTGATG
  ACTATGATCA CATGGGAGCG GGGAGCAGGA TTGCTACAGC GCCCGGGAAC CGAACCTGGG
  CATTCAGCCG GGTCCTCGGG CTCTCGAACG CTACTTTTGT TGCATCGCGC GCTGCGCTGG
  TCCCAGCTCT GCCTCCACAG GGTGGCGACA GGGACGCTTG GAGGTCCAGA TGCGGGCACG
  CAGTGCGGGG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8665363	WI_WGS_11_71107347	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6259572					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70410854 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3187	CpG island 3187	within coordinates
Gltpd2	glycolipid transfer protein domain containing 2	within coordinates
Gm12317	predicted gene 12317	1985 bp upstream
Rr450318	regulatory region 450318	822 bp distal
Rr450319	regulatory region 450319	191 bp proximal
Tssr102724	transcription start site region 102724	867 bp downstream
Tssr102725	transcription start site region 102725	853 bp downstream
Tssr102726	transcription start site region 102726	825 bp downstream
Tssr102727	transcription start site region 102727	388 bp downstream