rs6259595 SNP Detail

Summary

• ID
  rs6259595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136058848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAATGC AGAAGGGACA
  CTTCGCTGAC TCTTTCAAAT TGCAAATTGC TCATCTCTAT GAGATGCTTT GAGGTGCAGC
  ACACCGCCCA GCCCAGAGAC CAGGTTCTTA CCCATGCCTA GCCACAGACT CGCTGTATGA
  CCTTGGGGTG TTCCTCTTTG AGTCCCGTTC CTCATTTAGG AAAGGAAGAT CCCACTGAGA
  Y
  TGAGGTACCA TGACTTCGAG GGCCGTGGTT CCCGAATGGT CAACTTCCCA GGGACGAGTC
  CATCATGCCA CTCCCGCTTT CACTCCCAAG CCCTCCAATC CTACCCCGCC CCTCCCAGCC
  ACCCGATGGA CGGGAGCCAA GAGGTCTCTT TAAAGGCTCA AGTCCCGCCT CTGCTGCTCG
  TTGGGGCCTT CTATTGGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8665386	WI_WGS_1_137002504	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6259595					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136058848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	7 bp proximal
Gm15850	predicted gene 15850	within coordinates
Kif21b	kinesin family member 21B	279 bp upstream
Rr396320	regulatory region 396320	within coordinates
Rr419368	regulatory region 419368	within coordinates
Rr419369	regulatory region 419369	63 bp proximal
Rr419370	regulatory region 419370	288 bp proximal
Tssr9041	transcription start site region 9041	253 bp upstream
Tssr9042	transcription start site region 9042	272 bp upstream
Tssr9043	transcription start site region 9043	301 bp upstream
Tssr9044	transcription start site region 9044	333 bp upstream
Tssr9045	transcription start site region 9045	1926 bp upstream
Tssr13914	transcription start site region 13914	65 bp downstream
Tssr13915	transcription start site region 13915	1935 bp downstream