rs6259741 SNP Detail

Summary

• ID
  rs6259741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136058932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tatgacctt ggggtgttcc tctttgagtc
  ccgttcctca tttaggaaag gaagatccca ctgagactga ggtaccatga cttcgagggc
  cgtgGTTCCC GAATGGTCAA CTTCCCAGGG ACGAGTCCAT CATGCCACTC CCGCTTTCAC
  Y
  CCCAAGCCCT CCAATCCTAC CCCGCCCCTC CCAGCCACCC GATGGACGGG AGCCAAGAGG
  TCTCTTTAAA GGCTCAAGTC CCGCCTCTGC TGCTCGTTGG GGCCTTCTAT TGGCGGCCTC
  TGGGAGGGGC GGGGCCCTGC GCGGCTCTGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8665532	WI_WGS_1_137002588	WI	MOUSE	f	SNP			T	C
ss45011586	mCV22544788	ABI	CRAMUS_MOUSE	f	SNP	C	T			C
ss145553101	ENSMUSSNP4719935	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T			C
ss319994789	CHEV_1_138027771	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6259741					SNP	C	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136058932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi805	CpG island 805	within coordinates
Gm15850	predicted gene 15850	11 bp upstream
Kif21b	kinesin family member 21B	195 bp upstream
Rr396320	regulatory region 396320	within coordinates
Rr419368	regulatory region 419368	22 bp distal
Rr419369	regulatory region 419369	within coordinates
Rr419370	regulatory region 419370	204 bp proximal
Tssr9041	transcription start site region 9041	169 bp upstream
Tssr9042	transcription start site region 9042	188 bp upstream
Tssr9043	transcription start site region 9043	217 bp upstream
Tssr9044	transcription start site region 9044	249 bp upstream
Tssr9045	transcription start site region 9045	1842 bp upstream
Tssr13914	transcription start site region 13914	9 bp upstream
Tssr13915	transcription start site region 13915	1851 bp downstream