rs6259909 SNP Detail

Summary

• ID
  rs6259909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107378515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTCCCCA GTCCCCTGCT
  CATAGGTAGG GAGTCTGCTG GGACTTGGGT GGGGAACAAG GCAGGACAGA TCCTCTCTCC
  TTGGACTGGC CTGGGTCTGG TGGCCACCAT GGAGGAAGAG ACCAGGCCCA GACAAGTGGG
  CAGGTTGGGT ATTGAGGGGA GGCAGGCAGG GTGGAGCTGT GGTCACAGCT CTGACTCAGG
  R
  GTGCTGGCCA AGAGGTAGCC GCTTCCATAG CGTCCGTTGG GATTGTTGCT GTTATCCAAG
  GGTGATGTGC TGCCAGGCCC CAGATAGGAG CGGTGGGTGG GCATGGGGGA GGGCGCCTCA
  CTGGGCACCT TGCTGAGGAT GAAGCGCGTC TCATCGTTCT CCTCCAGATT GGAGATGTCC
  TTCATCATGC GGCCCTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss8665700	WI_WGS_3_107964496	WI	MOUSE	f	SNP								G		A
ss46855977	NES10709950	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G		G	G	G	A	G	A	G
ss135584366	ENSMUSSNP2926056	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs6259909					SNP	A	A	G	G	G	G	G	G	G	A	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46855977	NES10709950	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107378515 () rs orientation: forward

Symbol	Name	Function Class
D3Mit103	DNA segment, Chr 3, Massachusetts Institute of Technology 103	1443 bp distal
Rr582982	regulatory region 582982	1265 bp proximal
Slc6a17	solute carrier family 6 (neurotransmitter transporter), member 17	within coordinates