rs6260706 SNP Detail

Summary

• ID
  rs6260706
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9674402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         CCGACAGGCC
  GCCGGGCGCC GCTGAGCCGC TGAGCCGCTG AGCCGCAGTT CCGCGCGCTG CCCACCGCCG
  CCTGACACAC CCCTcccggc ccgcgccgct gcgctcggcc tccccggcgc cccggcgccc
  cgccgagccc gctgcgcccc ccACCGATCC CCGGCACCTC GCACGCACCT TCACCGCGCC
  TCGGGCGGGG CCCTTGGGAA GCGCACGGCC GGGTCCGAGG GGCACGAAGC Gctcctcagc
  K
  tcctcgtcgt cctcgtcgcc gtccaccacc tcgacaacca cctcttcgtc ctcttcctcg
  tcgtcgtcct cctcctccgc gacccctcgg ggcttctccg ttacccgccc gcgcgtcctg
  cgccttcggc ccgcgccctc ctcgtcctcg tcctcctcGC Ccagcagcag caggaccggc
  gacgaggcgg cggcagcgcg cgaggggccg gtcccgcgcg gcggcggcag cggcggcCTC
  CAGCTTCCCG                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8666501	WI_WGS_3_9646095	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6260706					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9674402 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	within coordinates
Gm56803	predicted gene, 56803	359 bp downstream
Rr69501	regulatory region 69501	1199 bp proximal
Rr78141	regulatory region 78141	within coordinates
Tssr28346	transcription start site region 28346	518 bp downstream
Tssr28347	transcription start site region 28347	501 bp downstream
Tssr32578	transcription start site region 32578	691 bp downstream
Tssr32579	transcription start site region 32579	732 bp downstream
Tssr32580	transcription start site region 32580	748 bp downstream
Tssr32581	transcription start site region 32581	891 bp downstream
Zfp704	zinc finger protein 704	within coordinates