rs6260794 SNP Detail

Summary

• ID
  rs6260794
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107378629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGG TGGGTGGGCA TGGGGGAGGG
  Y
  GCCTCACTGG GCACCTTGCT GAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
ss8666589	WI_WGS_3_107964610	WI	MOUSE	f	SNP			C	T
ss45422231	mCV24920078	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss135584372	ENSMUSSNP3460226	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ
rs6260794					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107378629 () rs orientation: forward

Symbol	Name	Function Class
D3Mit103	DNA segment, Chr 3, Massachusetts Institute of Technology 103	1557 bp distal
Rr582982	regulatory region 582982	1151 bp proximal
Slc6a17	solute carrier family 6 (neurotransmitter transporter), member 17	within coordinates