rs6261405 SNP Detail

Summary

• ID
  rs6261405
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32112242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAGAAT TTTGAAACAG
  AAAAATTTAT CTTTTGCCAA ATTAAACGCT GTATAAATAT GCATACTTTA TTTTCTACGA
  TGCCCATTTC ATTGTAAAGC AGTCCAAGTG CAAACTCACT TGAGTTTTAT TTTATTCTTA
  AGTTTTATTT ATTTATTGAG TTTTATTTTA TTTCCTTAGT TGTTCTCACT TACCTTTCTG
  M
  CCACACATAA GGAAAATATG TGACTCACGA AACCCAAAAC CTAGAAATCA AAAATATCAT
  TTCGTTTTAT TTTTTAAAAA TTGCTTCTTA CCCATTTGTT TACAATGTTT ATTTATCTTT
  TTTTTTCATA AGGGAATTCA TTTCTCAAGT TCAGTTTCTT AACCTCATAA TAATAATACT
  GGTGTGTGTT TTTTTTAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss8667203	WI_WGS_12_26165283	WI	MOUSE	f	SNP	A			C
ss39002540	mCV22596096	ABI	CRAMUS_MOUSE	f	SNP		A	A	C	C
ss137572533	ENSMUSSNP6366321	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs6261405					SNP	A	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32112242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4539	CpG island 4539	635 bp distal
Gm51992	predicted gene, 51992	within coordinates
Gm60244	predicted gene, 60244	478 bp upstream
Prkar2b	protein kinase, cAMP dependent regulatory, type II beta	947 bp upstream
Tssr116073	transcription start site region 116073	1292 bp upstream
Tssr116074	transcription start site region 116074	1035 bp upstream
Tssr116075	transcription start site region 116075	942 bp upstream
Tssr116076	transcription start site region 116076	926 bp upstream