rs6261514 SNP Detail

Summary

• ID
  rs6261514
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:3685011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATAGTTGG AACAATAATA
  TGAACTAATA AGTACCCCCA GAGCTTGTGT CTCTAGCTGC ATATGTAGCA GAAGATGGCC
  TAGTTGGCCA TCACTGGGAA GAGAGGCCCC TTGGTTCTGC AAACTTTATA TGCCCCAGTA
  CAGTGGAACA CCAGGGCCAA GAAGTGGGAG TGGGTGGATA GGGGAGCAGG GTGGGGGGAA
  K
  GTATAGGGGA ATTTTGGGGA TAGCATTTGA AATGTAAATG AAGAAACTAT CTAATAAAAA
  AATTTTAAAA AGAAAAAAAA AAAGAAGAAA TAGTCAGTTG CTTGACATTC GTTGTTGGGT
  CTAAAACTAG GTCCTCTCCA AGAGTCATCT CTCCATTCCC CTAACTTAAA TAGCAAATAA
  AGAACAACAT CACCAAAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8667312	WI_WGS_3_3629026	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6261514					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3685011 () rs orientation: forward

Symbol	Name	Function Class
Hnf4g	hepatocyte nuclear factor 4, gamma	Intron
Rr573144	regulatory region 573144	871 bp distal