rs6261626 SNP Detail

Summary

• ID
  rs6261626
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:3685078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         atatgaacta
  ataagtaccc ccagagcttg tgtctctagc tgcatatgta gcagaagatg gcctagttgg
  ccatcactgg gaagagaggc cccttggttc tgcaaacttt atatgcccca gtacagtgga
  acaccagggc caagaagtgg gagtgggtgg ataggggagc agggtggggg gaangtatag
  gggaattttg gggatagcat ttgaaatgta aatgaagaaa ctatctaata aaaaaATTTT
  W
  AAAAGAAAAA AAAAAAGAAG AAATAGTCAG TTGCTTGACA TTCGTTGTTG GGTCTAAAAC
  TAGGTCCTCT CCAAGAGTCA TCTCTCCATT CCCCTAACTT AAATAGCAAA TAAAGAACAA
  CATCACCAAA AATTCATGTT GGAAAAGCTT CCACAGGTCT TTTNTAACTG TCATGTGATT
  AAATCATGTA CTGAGGtgtt ttgttttgtt ttgctttgtt ttgttttctt tGCGGGTACA
  GTTGAGTGTT                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8667424	WI_WGS_3_3629093	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6261626					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3685078 () rs orientation: forward

Symbol	Name	Function Class
Hnf4g	hepatocyte nuclear factor 4, gamma	Intron
Rr573144	regulatory region 573144	938 bp distal