rs6262504 SNP Detail

Summary

• ID
  rs6262504
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:107346024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCGGCCT CTGCTATTGC
  ACGCATCCTC TGGCCACTGG CCAGGAAGTA CAGTATTGCA ACTGGTCTCC TCTCGCCCGA
  GGTGTCCCCT TCTCAGACCC CTGAGCCAGA TGGGCAAACA GATCCCCTTC CATCTGCCCA
  GCAGCATCTT TGAAAAGAAA TGGACAAAGG AGACACACAA AAGAAATGAA ATTCCCCCTA
  Y
  CACAGACACA GAAGGGGCAT TGGAAGGAGT GACAGAGGCT GCAAAAGAGC CCCTAGAAAT
  GCCCCACAAA CTGGGGTGTG GGGTGGGAGG TAGAACCCCA ATCTGGGGTG GGGTTGGGCT
  AGTGAAGCAG TGACCCCGGA GGGCAATCTT GCCTTCAACT GACTTCAACA GGCCACCTGC
  TGGCAGGGGA AACATCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8668305	WI_WGS_3_107931578	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6262504					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107346024 () rs orientation: forward

Symbol	Name	Function Class
A330043J11Rik	RIKEN cDNA A330043J11 gene	1633 bp downstream
Kcnc4	potassium voltage gated channel, Shaw-related subfamily, member 4	mRNA-UTR
Rr582973	regulatory region 582973	1941 bp distal
Rr582974	regulatory region 582974	759 bp proximal