rs6262637 SNP Detail

Summary

• ID
  rs6262637
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:3685242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTAAATG AAGAAACTAT
  CTAATAAAAA AATTTTAAAA AGAAAAAAAA AAAGAAGAAA TAGTCAGTTG CTTGACATTC
  GTTGTTGGGT CTAAAACTAG GTCCTCTCCA AGAGTCATCT CTCCATTCCC CTAACTTAAA
  TAGCAAATAA AGAACAACAT CACCAAAAAT TCATGTTGGA AAAGCTTCCA CAGGTCTTTT
  M
  TAACTGTCAT GTGATTAAAT CATGTACTGA GGTGTTTTGT TTTGTTTTGC TTTGTTTTGT
  TTTCTTTGCG GGTACAGTTG AGTGTTTACT GTGTAACTGA AGCCAGCCTC AAATTTGTGT
  TTTTCCTGCC TCAGTCTCTG GATCCAAAGA TTATGGATGT ATATCACAAT ATATGGTAAC
  AATGAAGCTT TTGCATCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8668438	WI_WGS_3_3629257	WI	MOUSE	f	SNP							A		C
ss49549991	NES12908714	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		C		A	A	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6262637					SNP	A	A	A	A	A	A	A	C	C	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49549991	NES12908714	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:3685242 () rs orientation: forward

Symbol	Name	Function Class
Hnf4g	hepatocyte nuclear factor 4, gamma	Intron
Rr573144	regulatory region 573144	1102 bp distal