rs6263289 SNP Detail

Summary

• ID
  rs6263289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105056421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC AACAGTCGCT ACCCTGCCTT
  R
  AAAAGGCTTA ATGACTCTAG CAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8669091	WI_WGS_4_102916298	WI	MOUSE	f	SNP	A	G
ss321243109	CHEV_4_104871829	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6263289					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105056421 () rs orientation: forward

Symbol	Name	Function Class
6030451C04Rik	RIKEN cDNA 6030451C04 gene	1512 bp upstream
Plpp3	phospholipid phosphatase 3	within coordinates
Rr376951	regulatory region 376951	1261 bp downstream
Rr596555	regulatory region 596555	1494 bp proximal