rs6263508 SNP Detail

Summary

• ID
  rs6263508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185914197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTACTGTG TAGTGTGTGT
  GTGTGGTATA ATTGCTGTTG TAATGTGTGA TCTGAGCTTA GAATAAAAGA ACCTATTTCT
  TCAGCCAGCT ACCTGGAGAC TTTGGGACTC CTTGACAAAT GTTGCCAATA AAACCAACCT
  AGCTGATTGT TATTTAATAA AGCCCAGCAC TGTGAAAAGA TACAAATGTG GCTGTGTTTA
  Y
  AAGTCAGCGA GCTCACAGCA GTTCGCCCAG ATCTCTCCTT TTCAGAGATG GTGATAAAGC
  TATATTGACT TCGTAAAACA GATAAAGAAA TTGGAGTGAG AAATACAAGA TATTGAGTCA
  GCACAGCCAG GGATCAAGAT GTTCCCTGGA GTCTTTTTGT GTGATCACGT CCCATAGCCA
  AGTTCACTTA TCCAAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8669311	WI_WGS_1_187301756	WI	MOUSE	f	SNP							C		T
ss46741639	NES10647397	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6263508					SNP	C	C	C	C	C	C	C	T	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46741639	NES10647397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185914197 () rs orientation: forward

Symbol	Name	Function Class
Gm37134	predicted gene, 37134	within coordinates
Gm37272	predicted gene, 37272	257 bp upstream
Rr425457	regulatory region 425457	475 bp proximal