rs6263699 SNP Detail

Summary

• ID
  rs6263699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47010410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTTCTCA GGTCACAGCA
  CCTCAAGACT GGAGAAGGTG CCTGAGACAC TCCCACAGAA CTCTCTTATG ATGTAGAAGG
  TGGGCTCAGA GAGGGCAAGT GAGGCTGCAC AGCACAGCAC CCTGAGTCCA GACTCCCAGT
  AGTGCTCTCT GCCTACGTGG TTCCTGGCAA TCCCTGTGGT AAAAGTCACC ATCCCTGTGA
  R
  TGCTCACCCT GAGGGGCTGT CAAAAAGAGG GTGTTCCCCC TGGATCCTGA AAAGCATTAA
  GGGCACAGCC CTGTTGTTTG AAAACCGCAT CCCCGTTCAT TTTCATATGT GCACTTTACA
  GAAACACCAA CAGATGTGCT AGCTCTCCCC TTGCCAGATT CCTGGGAGAT GCAAGACTCA
  AGAAACGTTG TGCTTGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8669502	WI_WGS_4_45857953	WI	MOUSE	f	SNP							G		A
ss37991028	NES09451422	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	A		G		G	G	G	G	G	G	A	G
ss45613790	mCV25226625	ABI	CRAMUS_MOUSE	f	SNP		A					G			G
ss146270537	ENSMUSSNP3222510	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6263699					SNP	G	A	G	A	G	A	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991028	NES09451422	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47010410 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	450 bp upstream
Rr367622	regulatory region 367622	218 bp upstream
Tssr37147	transcription start site region 37147	828 bp upstream
Tssr41615	transcription start site region 41615	387 bp downstream
Tssr41616	transcription start site region 41616	716 bp downstream