rs6263710 SNP Detail

Summary

• ID
  rs6263710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85707227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCCCGCC TGCCCGAGGG
  CCTGGGTCGG ACTTTGCCCC TGGCCCGTCG GGGCGCGGAG GGGGCGGGGT AATGCTTTCG
  GGCATCCCTG GCGCCTGGGC AGGCTGGTAC AGAGCTGCCT CCTCCCCTGG GTATGTGCCC
  TTCCCTTCTA CCAGAAGGTC TAGGGTCCCC ATTCCCTACC ACTTATCTTT GAAGTCTGAA
  Y
  ACTCTTCTCA TCTACGTCCA CTTCAGTCGG GGGTGAGCTA CCTTCCAATA CATAGAATAC
  CTAAAGGAAG TAGCCCCCTT CTTCCCACCC AAGTAAAAGG GCAAAAATCG CAAATCGAGA
  AAAATGCGAG AACACAAAGC CCCTTCTCCA GGAATGGGAA GGTAGAGGTT TACATAGCCG
  GCCTTGCAGT TAGGTAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8669513	WI_WGS_8_84681709	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6263710					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85707227 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20738	CpG island 20738	1552 bp distal
Cpgi20739	CpG island 20739	492 bp distal
Junb	jun B proto-oncogene	1850 bp upstream
Rr187033	regulatory region 187033	within coordinates
Rr401033	regulatory region 401033	1639 bp downstream
Rr401034	regulatory region 401034	419 bp downstream
Tssr78496	transcription start site region 78496	1993 bp downstream
Tssr78497	transcription start site region 78497	1969 bp downstream
Tssr78498	transcription start site region 78498	1611 bp downstream
Tssr78499	transcription start site region 78499	401 bp downstream
Tssr78500	transcription start site region 78500	349 bp downstream
Tssr78501	transcription start site region 78501	233 bp downstream
Tssr82225	transcription start site region 82225	1874 bp upstream
Tssr82226	transcription start site region 82226	399 bp downstream
Tssr82227	transcription start site region 82227	456 bp downstream