rs6263755 SNP Detail

Summary

• ID
  rs6263755
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:47010451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGACACT CCCACAGAAC
  TCTCTTATGA TGTAGAAGGT GGGCTCAGAG AGGGCAAGTG AGGCTGCACA GCACAGCACC
  CTGAGTCCAG ACTCCCAGTA GTGCTCTCTG CCTACGTGGT TCCTGGCAAT CCCTGTGGTA
  AAAGTCACCA TCCCTGTGAG TGCTCACCCT GAGGGGCTGT CAAAAAGAGG GTGTTCCCCC
  W
  GGATCCTGAA AAGCATTAAG GGCACAGCCC TGTTGTTTGA AAACCGCATC CCCGTTCATT
  TTCATATGTG CACTTTACAG AAACACCAAC AGATGTGCTA GCTCTCCCCT TGCCAGATTC
  CTGGGAGATG CAAGACTCAA GAAACGTTGT GCTTGGAGTC TATGGGGAGC CAGAGAAGTC
  CCAAGCCTAG CGTTTCCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8669558	WI_WGS_4_45857994	WI	MOUSE	f	SNP						T		A
ss37991026	NES09451426	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	A		T		T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6263755					SNP	T	A	T	T	A	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37991026	NES09451426	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:47010451 () rs orientation: forward

Symbol	Name	Function Class
Gm568	predicted gene 568	within coordinates
Gm68750	predicted gene, 68750	409 bp upstream
Rr367622	regulatory region 367622	177 bp upstream
Tssr37147	transcription start site region 37147	787 bp upstream
Tssr41615	transcription start site region 41615	346 bp downstream
Tssr41616	transcription start site region 41616	675 bp downstream