rs6263838 SNP Detail

Summary

• ID
  rs6263838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:146289318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCATCCA CCTTAAATTT
  CCTTCTACAC TTCAAGTGCT TTAAGCTCTC ATCTTACATA CTCTCCATTT CCTATGTGGA
  GTTAATTCGT CTGCTCTTTC TCTTGATGAT TATCCAGCTG GCCCCTGCTT TTTGTGTTTT
  TGACTTATGA TGCTTTAGTT TTATAATGAT GTAAAAGCAG TACATAGTGC CGTATATTGC
  Y
  GTGGTTTCAG CTTTAAGCAT TTATCCAAAA GTCCATGTAT GAAAGGCTTG GTCATCAGCC
  TTTGGTGCCA TTGAGAGGGG CTGGAATCTT TAGGAGATAG GACCTAAGCG TTCTGCCTTC
  ACTTCCTGAT CTTATGAGGC ACACAATGTC ATTTGAGCTT CAGTCATGAT GTACCATGCT
  TCCACAAGCT CAAACGATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8669641	WI_WGS_5_145303040	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6263838					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146289318 () rs orientation: forward

Symbol	Name	Function Class
Gm38747	predicted gene, 38747	1025 bp upstream