rs6263865 SNP Detail

Summary

• ID
  rs6263865
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103286102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGGAGA GGAAGTTAGG
  CAATAATGTG ATTATCAAAT GTGGAAAGGA AAATTACTTA ATAGTTCACT AAGGAACTCC
  AAGTCAGGTA TGTGGTGGAA GCCCCTTCCA GTTGGCTATT TTTAAATCAT ATTTTCCTGT
  GAAGGGACAC AGAATCAAAA TTATTACCTG TGGATTGAAG AGCTTGATAA TTAAAGGAAT
  S
  GCTAAGTCCT CTGCTAGTGG CAGGAGATGC TAATCCTCTT GCCGTGAGGG CTTGTGTCTG
  GTTTGATCAC CTTCTACAAG TGATGGCCAC AAACCACAAT GTCCTTCCTT CCTCCTCCCA
  CCTCGGTCTA GCCTTCCCTT CACTGTTACC CGTCACCTCT GTTGTCATGT GCTTACCAGC
  TTGCATATTT TCACATCGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ	WSB/EiJ
ss8669668	WI_WGS_14_94254736	WI	MOUSE	f	SNP	C		G
ss62546541	NES17293534	PERLEGEN	MM_PANEL2	f	SNP		G		G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ	WSB/EiJ
rs6263865					SNP	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62546541	NES17293534	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103286102 () rs orientation: forward

Symbol	Name	Function Class
Acod1	aconitate decarboxylase 1	within coordinates
Gm41235	predicted gene, 41235	within coordinates
Rr496962	regulatory region 496962	27 bp proximal
Tssr4512	transcription start site region 4512	413 bp upstream
Tssr126971	transcription start site region 126971	1646 bp downstream
Tssr126972	transcription start site region 126972	214 bp upstream
Tssr126973	transcription start site region 126973	335 bp upstream
Tssr126974	transcription start site region 126974	589 bp upstream
Tssr126975	transcription start site region 126975	599 bp upstream
Tssr126976	transcription start site region 126976	616 bp upstream
Tssr126977	transcription start site region 126977	638 bp upstream
Tssr126978	transcription start site region 126978	679 bp upstream
Tssr126979	transcription start site region 126979	705 bp upstream
Tssr126980	transcription start site region 126980	725 bp upstream
Tssr126981	transcription start site region 126981	936 bp upstream
Tssr126982	transcription start site region 126982	971 bp upstream
Tssr126983	transcription start site region 126983	1031 bp upstream
Tssr126984	transcription start site region 126984	1199 bp upstream
Tssr126985	transcription start site region 126985	1635 bp upstream
Tssr130073	transcription start site region 130073	1798 bp upstream
Tssr130074	transcription start site region 130074	284 bp upstream
Tssr130075	transcription start site region 130075	245 bp upstream
Tssr130076	transcription start site region 130076	230 bp upstream
Tssr130077	transcription start site region 130077	34 bp downstream
Tssr130078	transcription start site region 130078	48 bp downstream
Tssr130079	transcription start site region 130079	73 bp downstream