rs6263952 SNP Detail

Summary

• ID
  rs6263952
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:151964449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACTGAAGT AGTCCAGGCC CACCCATGTT
  TGCTTCCTCC TGGTACATCC CAGTTCCACC AAACTCAAAG GTTATTCTCA TTAGGTAGAA
  TGTGAACAGC ATCGCCTTGA ATTGGAAGGT GTTTCTTATA ACCGTTTGTG TAATGAGCTT
  S
  TCAGCTCCTC ACACGTCTAA AAGAGAAATT AAAAAAAAAA AAAAGTTCAG GGGATCTGTG
  GCCAAGCGGC CCCCTCCCAA TGTCTGAGTC AGAGGAGCTT CACAGAGGAG CTTCACTGAG
  GTTCTGGTTG GTCAGGGTGT ATCACTTTCA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8669755	WI_WGS_1_153018762	WI	MOUSE	f	SNP	G	C
ss320062294	CHEV_1_153935828	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6263952					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:151964449 () rs orientation: forward

Symbol	Name	Function Class
1700025G04Rik	RIKEN cDNA 1700025G04 gene	Intron
Cpgi853	CpG island 853	910 bp proximal
Rr420417	regulatory region 420417	within coordinates
Rr420418	regulatory region 420418	1417 bp proximal
Tssr14207	transcription start site region 14207	1447 bp downstream
Tssr14208	transcription start site region 14208	1483 bp downstream
Tssr14209	transcription start site region 14209	1543 bp downstream
Tssr14210	transcription start site region 14210	1561 bp downstream
Tssr14211	transcription start site region 14211	1610 bp downstream