rs6264175 SNP Detail

Summary

• ID
  rs6264175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:63432630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTCTTTT TGTGTATATA
  AGGACCGGGG CATGTGTTCC CACTTTCGGT ATCTGGCATC TTGGGAGACT CACATCTTCT
  GCAGGATACA GTATGTCCCT GTGGCAGCTT TCACACACAC ACACTCCTAC CTACCTATAA
  GCCATATCCT AAAGATAAGC CTTGCCTTAT CTGGTGGAAT TGGAGCTGTG CACCTAAGAG
  R
  TCTCTTCTGA GCCCAAGGGA CTTTGCAGCT GAGAAAAACC AACAGCTCAC AGTTTGCTGC
  TGTCACTTAT AATCACAAGT ACAGTTTACT GAACACACAC CTTGTGCAAG TCACCATGGA
  AAGTCTTTAA CCAGTCTGAC TGCTTCATTA GCTGTGAGAA AACAGTATCT AAATCCGGTC
  TTTAAATGGA ACATCTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss8669978	WI_WGS_14_54286478	WI	MOUSE	f	SNP							A		G
ss49188613	NES12497582	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A		G		A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs6264175					SNP	A	A	A	A	A	A	A	G	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49188613	NES12497582	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:63432630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6601	CpG island 6601	1225 bp distal
Gm62940	predicted gene, 62940	within coordinates
Neil2	nei like 2 (E. coli)	1325 bp upstream
Rr289817	regulatory region 289817	371 bp proximal
Rr297365	regulatory region 297365	629 bp distal
Tssr129166	transcription start site region 129166	1673 bp upstream