rs6264336 SNP Detail

Summary

• ID
  rs6264336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27491070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         AGTTTCTGAA
  AACAATATTC TCATCAGTTA TGTGAACTTC CTTGGCTAGT ACTCCAAGCC TTAGGTTTTA
  AGTTAGCCCT GTGGGAATAA TAACAACAGA GATGAAAATA GATCTTCTGG TCCAAGGGTA
  TATGGCTTCT GTATAAGAAC ATTAAATTAT AAGGTGCTAC ACTAATTTAA GCCATCATAA
  ATGtatttta aatatacttt ttattattaa taaatttaaa tCACTTATCC TAGACCCACT
  Y
  TTCAAACACA CTGCAAATGN CTGTAACAAA GACAGTCACA GAGCCCAGGG GAGAGAGgag
  atggctcctt gactaagggt atttgcccaa gcttaatgtc atgtttgtat atctagaact
  cagagggcga aaagagttct gacttttcca aactgatctc tgaccacaca cattcaccAC
  ATCATTTGTA TATCCCCACT ACaaataaat aaataaatgt aaaaaaaaaa aaaaaaGAGC
  ACGGGGAAGA                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8670140	WI_WGS_10_27562218	WI	MOUSE	f	SNP							C		T
ss61265612	NES16880858	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	C		C	C	T	C
ss147030409	ENSMUSSNP3523589	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6264336					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61265612	NES16880858	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27491070 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1405	CpG island 1405	1583 bp proximal
Gm36962	predicted gene, 36962	within coordinates
Lama2	laminin, alpha 2	within coordinates
Rr224629	regulatory region 224629	130 bp proximal
Tssr97144	transcription start site region 97144	1731 bp downstream
Tssr97145	transcription start site region 97145	1741 bp downstream
Tssr97146	transcription start site region 97146	1757 bp downstream
Tssr97147	transcription start site region 97147	1821 bp downstream
Tssr97148	transcription start site region 97148	1855 bp downstream
Tssr97149	transcription start site region 97149	1945 bp downstream