rs6264353 SNP Detail

Summary

• ID
  rs6264353
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105056616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCT CGGTGCTTGC CAAGCCCACA
  Y
  CCCAAAATGG GTTCACATAG ATTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss8670157	WI_WGS_4_102916493	WI	MOUSE	f	SNP							T		C
ss38295342	NES09518689	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	C		C		T	T	T		T	T
ss321243110	CHEV_4_104872024	CHEVERUD	SCREENING_POP	f	SNP													C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs6264353					SNP	T	T	T	C	C	C	T	C	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38295342	NES09518689	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105056616 () rs orientation: forward

Symbol	Name	Function Class
6030451C04Rik	RIKEN cDNA 6030451C04 gene	1317 bp upstream
Plpp3	phospholipid phosphatase 3	within coordinates
Rr376951	regulatory region 376951	1456 bp downstream
Rr596555	regulatory region 596555	1299 bp proximal