rs6265316 SNP Detail

Summary

• ID
  rs6265316
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:4429602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATAGTAA ACTTTAGACT
  TGGCTAAAAA AATAAACTAA GTAATGCACT CAGTTTACTC TGGAGAATAA GTAGAGACAG
  TGGTAATAAG GAAACTGGAA TCTTGAGATC TGCTTCTTTC CTCCAGACGA ACTCCCTGGA
  GATAACAAAT TTTATTTGCC TCCAGCACAG TGTATACTAA AATTGTTTGC TGATGATGGG
  M
  TAGCTTGCTA TCAGTATCTT CCCTCCTGTG TTCAGAAATT CTGCTGCCAA AAGTTAGACA
  ATGGAGCAAT TAGGAACACT TTGCAAAATT AAGGAGGAAA AGATATTAAC TTTGGTTCAC
  CAGGTTTGGC TGTGGCTATG CTTGCCTGCC TTGTGATGGG CCTCAGTCAA CAGCACTTTT
  AACTCTGTCC TGAACAGTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8671121	WI_WGS_1_4365341	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6265316					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4429602 () rs orientation: forward

Symbol	Name	Function Class
Rp1	retinitis pigmentosa 1 (human)	Intron
Tssr10872	transcription start site region 10872	858 bp downstream
Tssr10873	transcription start site region 10873	877 bp downstream