rs6265332 SNP Detail

Summary

• ID
  rs6265332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4429616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACTTGGC TAAAAAAATA
  AACTAAGTAA TGCACTCAGT TTACTCTGGA GAATAAGTAG AGACAGTGGT AATAAGGAAA
  CTGGAATCTT GAGATCTGCT TCTTTCCTCC AGACGAACTC CCTGGAGATA ACAAATTTTA
  TTTGCCTCCA GCACAGTGTA TACTAAAATT GTTTGCTGAT GATGGGCTAG CTTGCTATCA
  R
  TATCTTCCCT CCTGTGTTCA GAAATTCTGC TGCCAAAAGT TAGACAATGG AGCAATTAGG
  AACACTTTGC AAAATTAAGG AGGAAAAGAT ATTAACTTTG GTTCACCAGG TTTGGCTGTG
  GCTATGCTTG CCTGCCTTGT GATGGGCCTC AGTCAACAGC ACTTTTAACT CTGTCCTGAA
  CAGTTGCCTC AATATATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8671137	WI_WGS_1_4365355	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6265332					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4429616 () rs orientation: forward

Symbol	Name	Function Class
Rp1	retinitis pigmentosa 1 (human)	within coordinates
Tssr10872	transcription start site region 10872	844 bp downstream
Tssr10873	transcription start site region 10873	863 bp downstream