rs6265981 SNP Detail

Summary

• ID
  rs6265981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:146289763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCCAGGA GGATGCCAGC
  CAGCCACGTG ATCAGGGTAA AATAAGCCAC ATGACCAGGC TTACAGCATT GTCACACTAG
  GACTTGCAGC GTGCTAGGAG AAGTCGCAAT TTACAGTACT TTCAACTTAT GATGAGTCTG
  CAGGGGTGTC TCTCACCCTA AATCAAGCTG CAGGTACAGT TAGCCAATCA GGTAGCCAGC
  R
  CATGAGGTAA GAAGTGATGT CCCCTGCTAT ACCTATGCCA TCTAACAGAA AGATTTATTA
  GCATTATAGA GATTTCTGGG ACACTTTGTG CATTGCAATG TCCAAAACCT TACGTTGTTT
  TATGTATATG TGTGTTTTGC TTACTCCAGT ATCTATCTAT ACATCACTTG TGTTCTTAGT
  ATCCACAGAG GCCAGAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8671790	WI_WGS_5_145303485	WI	MOUSE	f	SNP							G	A
ss51537888	NES14870460	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G			G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6265981					SNP	G	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51537888	NES14870460	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146289763 () rs orientation: forward

Symbol	Name	Function Class
Gm38747	predicted gene, 38747	580 bp upstream