rs6267534 SNP Detail

Summary

• ID
  rs6267534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:39534414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTTAAT TTTATTACTT
  ATGTGTATGA CTGGTTTGTA TATATATATA TATATATATA TATATATATA TACATACATA
  TATATATATA TATATATATA TACACATATA TATCATGTGT ATAATACCCA TGGAAACCAG
  AAGAAGGTAT TAGATCCCCT GGAAATGGAG CTACAGATGG TTGTAAGCCA ACATGTGGGT
  R
  TTGGAAATTG AATCTGGGTC CTTTGGAAGA ACAGCCAGTG CTCTTAACCT CTGAGCCAGC
  TCCCCAGCCC CCTACAGTTT TTAACAGTCC CAATACTGTT CCAAGATCAA AAGTCCCCTC
  TGAGACTCAA GACAACCTCT TAAATGTGAA GCTGTGGGAA ATAAAAATAC ATGCTACATA
  CTTCCAACAT ACACTAACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8673348	WI_WGS_1_40005034	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6267534					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:39534414 () rs orientation: forward

Symbol	Name	Function Class
Rr409882	regulatory region 409882	1856 bp proximal
Tssr6382	transcription start site region 6382	1976 bp downstream