rs6268167 SNP Detail

Summary

• ID
  rs6268167
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:69335116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATA ATAATTTTGG ATTTTAGCCA
  W
  CACCTGATTT TCCTATCAAT AAAAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8673982	WI_WGS_8_68274328	WI	MOUSE	f	SNP		T	A
ss46265509	mCV24073373	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss145084082	ENSMUSSNP2417286	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322692311	CHEV_8_71406363	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6268167					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69335116 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20405	CpG island 20405	840 bp distal
Gm64236	predicted gene, 64236	within coordinates
Lpl	lipoprotein lipase	Intron
Rr664455	regulatory region 664455	1963 bp distal
Rr664456	regulatory region 664456	863 bp distal
Rr664457	regulatory region 664457	362 bp distal
Rr664458	regulatory region 664458	508 bp distal
Rr664459	regulatory region 664459	97 bp proximal
Tssr77601	transcription start site region 77601	1900 bp downstream
Tssr77602	transcription start site region 77602	1822 bp downstream
Tssr77603	transcription start site region 77603	1792 bp downstream
Tssr77604	transcription start site region 77604	1747 bp downstream
Tssr77605	transcription start site region 77605	1734 bp downstream
Tssr77606	transcription start site region 77606	1883 bp upstream
Tssr77607	transcription start site region 77607	1949 bp upstream
Tssr77608	transcription start site region 77608	1970 bp upstream