rs6268601 SNP Detail

Summary

• ID
  rs6268601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:19570714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCTAGAA TGTTTGCCAA
  GCCAGCCATA TGCTAGATCC TGAGTTCAAT CCCCAATAGT GCAAAAATAA AGAGAAGCAT
  CTAAGTGCGG AACACCAGTA ATGAGCCAAA TTCTTTGCAT CGCTGTGGAA GACGTTTTTA
  AGAGTGAGAT GTGTCTTAAA TGGCAGTCTG AGAGCCCTGG TATTTATAGT CTTAAGGGGG
  Y
  GTGTTATCTT AACTTTCAGA TGTCAATCTT CGTTAGAAAA TAAGTTCCAG CACCAACTCT
  ACTTGTGTAC TAGTTCATGT TTCTTAAGGT GACTCTCAGA CAGCCCTTGG CTCTCTTACA
  GCGTAGGTTA TATGGAACTC AAAATGGAAT CAGTGCTATC AAAGCATAGT TACATTAATC
  ATAGTTCAAA TGCCAATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8674418	WI_WGS_2_19716482	WI	MOUSE	f	SNP							T		C
ss37364103	NES08783818	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		T		T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6268601					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37364103	NES08783818	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:19570714 () rs orientation: forward

Symbol	Name	Function Class
Rr552495	regulatory region 552495	1736 bp proximal