rs6269012 SNP Detail

Summary

• ID
  rs6269012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8108000 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCATA AAATAATTAA TTACTAATAT
  Y
  TGTCTTTAGG TTAGGCAAGC AGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8674830	WI_WGS_5_5803285	WI	MOUSE	f	SNP	T	C
ss321459861	CHEV_5_8058000	CHEVERUD	SCREENING_POP	r	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6269012					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8108000 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi15530	CpG island 15530	1092 bp distal
Rr607089	regulatory region 607089	1463 bp distal
Rr607090	regulatory region 607090	1278 bp distal
Rr607091	regulatory region 607091	53 bp proximal
Sri	sorcin	within coordinates
Tssr45107	transcription start site region 45107	1449 bp downstream
Tssr45108	transcription start site region 45108	1415 bp downstream